PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_16748_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 346aa    MW: 39014 Da    PI: 7.4731
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_16748_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.78.6e-13177224355
                                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                 + h ++Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++Y+k+Lq
  Cotton_A_16748_BGI-A2_v1.0 177 QDHIMAERKRREKLSQRFIALSAIVPGL-----KKMDKASVLGDAIKYLKQLQ 224
                                 6799************************.....9******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.069174223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-10177224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-17177240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.8E-17178233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.93E-13179228No hitNo description
SMARTSM003534.3E-15180229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MEISSIRELP EFVRLLSSYF LFLYVIDSFV LSTVCLQQMS NPQGIMEDPN LFHQWHMNSL  60
DELSFLPVTA AVDNYPDYSG AIGRPPKQLK TNCWGDSCNV SNLEASVFSP DALSFAASNN  120
VINPRGILKP KEEEAACSKS MEPFPSEILF SQNPFGTQNY VLKGCHGSKR LGISQTQDHI  180
MAERKRREKL SQRFIALSAI VPGLKKMDKA SVLGDAIKYL KQLQEKVKTL EELTRKKSME  240
SVVFVKKSHL SAADNIDDFH QPLPEIEARF CDKSVLVRIH CEKRKGFPEK IMSELEKSHL  300
TVINSNTVTF GSSAVDITIV AQMDIEFCMT VKDFVKKLRS AFESLM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182187ERKRRE
2183188RKRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012469147.10.0PREDICTED: transcription factor bHLH25-like
TrEMBLA0A0D2NQZ90.0A0A0D2NQZ9_G
STRINGPOPTR_0009s08500.11e-116(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-59bHLH family protein